You need the function 'quartzFonts'. With this function, you can define additional font families to use in your R base graphic plots. The default font families are 'sans', 'serif' and 'mono'. Let's say, I want to define a new font family with the 'Avenir' font. All I have to do is: The first element of the vector is the Summary: Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface. BLAST comparisons between multiple genomic regions, ranging from single genes to whole prokaryote chromosomes, can be generated, visualized and interactively coloured, enabling a rapid transition Ask a question Latest News Jobs Tutorials Tags Users. Feature-Annotation You may want to take a look into the genoPlotR package from CRAN. It allows you to read GenBank files directly and to extract your features of interest from the resulting data.frame. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene and genomes, in a highly automatic, flexible genoPlotR is among few R packages to draw genome alignment plot. I plan to arrange a genome alignment plot with other plots by packages like cowplot. But it seems that the output of plot_gene_map() function can only be exported into a image file. 1. Launch EC2 instance: we will run Ubuntu 14.04 LTS (64-bit) on an m3.2xlarge instance. Before you click 'Review and Launch', increase the root file system size to 100 GB. 2. Download the data and unpack it into ```~/data``` (this step take a while, so we're going to get it running and go through the background). Read 4 answers by scientists to the question asked by Daniel Osorio on May 22, 2013 The following R programming syntax illustrates how to find out the package version which is currently loaded in R. For this tutorial, I'm going to use the dplyr package. Let's install and load the package to RStudio: install.packages("dplyr") # Install dplyr package library ("dplyr") # Load dplyr package. Now, we can use the packageVersion Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007 hmvantol / genoPlotR tutorial. Last active Dec 24, 2015. View genoPlotR tutorial. This file has been truncated, but you can view the full file. This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters. genoPlotR Genome Browser: IGV View genome data in IGV Download and open IGV Select in menu in top left corner A. thaliana (TAIR10) Upload the following indexed/sorted Bam files with File -> Load from URL RESULTS AND DISCUSSION. To demonstrate the basic functionality of CrusView, we prepared two example genomes and related data sets from Arabidopsis (n = 5) and E. salsugineum (n = 7) to perform visualized comparative genomics analyses.E. salsugineum (also known as salt cress and Thellungiella halophila) is a halophytic relative of Arabidopsis; it inhabits the seashore saline soils of eastern China. RESULTS AND DISCUSSION. To demonstrate the basic funct