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STAR manual 2.5.1a. Alexander Dobin dobin@cshl.edu. January 19, 2016. Contents. 1 Getting started. 3. 1.1 Installation. 3 Sep 2015 STAR can align spliced sequences of any length with moderate error rates providing scalability Parameters section, while a full list of options can be found in the STAR manual. STAR: ultrafast universal RNA-seq aligner. Contribute to alexdobin/STAR development by creating an account on GitHub. MANUAL. https://github.com/alexdobin/STAR/blob/master/doc/STARmanual.pdf. STAR for paired end reads and human genome Aligns paired end RNA-seq reads using the STAR aligner. Please see the STAR manual for more details. Spliced Transcripts Alignment to a Reference (STAR) is a fast RNA-Seq read uses STAR because it quickly aligns more reads than other aligner methods. I wouldn't fiddle too much with the parameters, STAR does a very good job using the default parameters. And, unless you plan on variant 5 May 2017That's a perfectly acceptable command. You don't need the file for htseq-count (featureCounts is much faster), you can use the same file as RNA-seq aligner. Contribute to alexdobin/STAR development by creating an account on GitHub. STAR is an aligner designed to specifically address many of the challenges of . Details on STAR and its functionality can be found in the user manual; we